PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_25494_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family SBP
Protein Properties Length: 666aa    MW: 74524.8 Da    PI: 7.4714
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_25494_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP31.25.9e-1019445378
                    TT--SS--S-STTTT-------S--- CS
             SBP 53 sefDeekrsCrrrLakhnerrrkkqa 78
                    ++fDe+krsCrr+L++hn+rrr+k+ 
  Neem_25494_f_1 19 KNFDEGKRSCRRKLERHNNRRRRKSV 44
                    68********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511419.853142IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-71945IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MVEVIVTIID LPSVLGLSKN FDEGKRSCRR KLERHNNRRR RKSVDSKGAV DNEPPGASHS  60
EDIVCDDDAG KDSLCLSSQI TDQETFLEAE DGHVTGLNSA PNAQNVNSDS GISFAASGEI  120
RIDGGKDNSK TSPSPSYCDN KSSYSSMCPT GRISFKLYDW NPAEFPRRLR HQIFQWLASM  180
PVELEGYIRP GCTILTIFVA MPKIMWMKLY ADPIRYVHDF VIAPGRMLSG RGPMFVHLNN  240
MIFHVKDGTS VMKVNVEVQA PRLHYVHPTC FEAGKPMEFV ACGSNLLQSK FRFLISFAGK  300
YLPYVYRIAS PHGETDGDPL TFDHQLYKIR VPHTEPNLFG PAFIEVENES GLSNFIPVLI  360
GDKETCSEMK IIQQRFEASL ITKRSQLMAG DSLSNLCGIS ALRQKTFTEL LVDIAWLLKV  420
PASESFLYFM SSSRVQRFNC LFSFLINNES TVILEKLLQN LKILMDSMEF NSAINGINDA  480
DLGLLFKYMD NAREILQRKL QKDGGLMQHA VNIVQERICG SQSSFQSNLL VPSTSQVRAS  540
ILSYRGSNKM ILDHDLDTRS NTKLGVMVYS AAVDRCETTP LLNKEVIMNV NLIKEWPRKS  600
CGHILSGTVL SSRPAIFVIV MAAVCFGVCV VVLHPQKIKY EAEVTWCTCK VVVHLDPDGR  660
ATWDIA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12840RRKLERHNNRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419725.10.0hypothetical protein CICLE_v10004348mg
TrEMBLV4S2K00.0V4S2K0_9R
STRINGVIT_05s0020g02160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63582644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7